Speaker

Aidan Lakshman

Aidan Lakshman

PhD Candidate, University of Pittsburgh

Pittsburgh, Pennsylvania, United States

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Aidan Lakshman is a PhD Candidate in Biomedical Informatics at the University of Pittsburgh. His dissertation focuses on developing tools for large-scale comparative genomics. He is expected to graduate in May 2025 and is actively searching for employment opportunities.

Aidan is an author of the `SynExtend` and `froth` packages, and is a contributor to `Biostrings`. In his free time, he plays jazz in Pittsburgh, learns about retro computing, builds mechanical keyboards, and hikes.

Area of Expertise

  • Physical & Life Sciences
  • Information & Communications Technology

Topics

  • Bioinformatics

Community Detection for Extremely Large Networks (copy)

Community detection in graphs has numerous applications from social networks to biology. However, the immense size of modern graphs makes it challenging to accurately detect communities. We set out to benchmark a variety of popular methods available in R to measure their accuracy and time complexity on synthetic and real datasets. Unsurprisingly, we found that less scalable algorithms tend to outperform more computationally efficient ones.

To address this issue, we introduce two new variants of the Fast Label Propagation algorithm for clustering extremely large networks, both available in the SynExtend package for R. Our implementations offer accuracy comparable to less scalable approaches while providing linear-time computational scalability.

Furthermore, we made it possible to apply our community detection algorithms outside of main memory, which permits community detection on graphs with billions of nodes using less than a gigabyte of RAM. These advances will help democratize scalable analyses by removing the need for expensive supercomputer resources. Together, this work both improves graph community detection and makes these analyses more accessible to researchers.

Aidan Lakshman

PhD Candidate, University of Pittsburgh

Pittsburgh, Pennsylvania, United States

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