Speaker

Mark Jensen

Mark Jensen

Director of Data Science, Center for Technical and Operations Support, Frederick National Lab for Cancer Research

Washington, Washington, D.C., United States

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Mark has been working in big data in cancer research for over 12 years. His expertise runs from software development and management to data architecture and modeling. He's been a Neo4j booster since Version 1.0 and is the author of a widely used driver in Perl called REST::Neo4p.

Area of Expertise

  • Physical & Life Sciences
  • Information & Communications Technology
  • Government, Social Sector & Education

Topics

  • Data Science
  • Data Management
  • Graph databases
  • Cancer Genomics
  • Bioinformatics

Driving Cancer Data Interoperability: Python, Liquibase, and Neo4j in Action at the MDB

Accurately reflecting the evolving data models, mappings, and terminology of the National Cancer Institute's Cancer Research Data Commons (CRDC) in the Metamodel Database (MDB) is crucial for cancer data interoperability.

In this session, Nelson and Mark will demonstrate how to use Liquibase, Neo4j, & Python to manage changes in Neo4j databases like the MDB efficiently. You'll learn how to leverage the Liquichange Python package to generate Liquibase Changelogs with Cypher queries from data model files and implement Liquibase with Neo4j, which provides version control, change previewing, and integration with CI/CD workflows, enabling comprehensive change management capabilities.

Mark Jensen

Director of Data Science, Center for Technical and Operations Support, Frederick National Lab for Cancer Research

Washington, Washington, D.C., United States

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